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2025.05.30 Xixian Wang, Sen Wang, Zhidian Diao, Xibao Hou, et al.,   Proc Natl Acad Sci U S A   

Label-free high-throughput live-cell sorting of genome-wide random mutagenesis libraries for metabolic traits by Raman flow cytometry
AREA OF INTEREST Industrial Biotech

Abstract: Chinese researchers have developed an advanced, high-throughput single-cell sorting platform that enables direct isolation of living cells with targeted metabolic profiles from large mutant libraries. The technology—now commercialized as FlowRACS 3.0—dramatically shortens the traditionally labor-intensive, colony-by-colony screening process for identifying high-value microbial strains. What once took months or even years can now be accomplished in hours or days.

SPECIES

Fungi

FlowRACS, Chips, Kits DOI : 10.1073/pnas.2503641122 PubMed : 40445753

2025.05.19 Jia Zhang, Jianmei Wang, Pengfei Zhu, Zhidian Diao, et al.,   iMetaOmics   

Raman flow cytometry based single-cell species classification, viable-cell counting and vitality test for probiotic products
AREA OF INTEREST Industrial Biotech

Abstract: Researchers from the Single-Cell Center at the Qingdao Institute of Bioenergy and Bioprocess Technology (QIBEBT) of Chinese Academy of Sciences, in collaboration with Yili Group, COFCO Corporation, and the University of Hong Kong, have developed an innovative method for comprehensive probiotic product evaluation based on a Raman Flow Cytometry (RFC) platform. This method enables rapid, label-free analysis of identity, viability, and metabolic vitality at the single-cell and strain levels in complex probiotic products, effectively generating a "microbial ID card" for each formulation.

SPECIES

Bacteria

FlowRACS, Chips, Kits DOI : 10.1002/imo2.70024 PubMed :

2025.04.25 Xiaoshan Zheng, Rui Li, Ting Wang, et al.,   Anal Chem   

Unraveling antibacterial mechanisms of surfactants against Staphylococcus aureus via single-cell Raman spectroscopy
AREA OF INTEREST Industrial Biotech

Abstract: Researchers have revealed the antibacterial mechanism of cationic and anionic surfactants against S. aureus using single-cell Raman spectroscopy (SCRS) in a multi-dimensional manner. The study provides new theoretical foundations and technical support for the application of surfactants in daily chemicals, medical fields, and beyond.

SPECIES

Bacteria

RACS-Seq, Chips, Kits DOI : 10.1021/acs.analchem.4c06380 PubMed : 40277167

2025.04.23 Xinxin Kang, Weixing Liu, et al.,   ACS Synth Biol   

Iron-derepressed robust production of fusarinine C siderophore by Aureobasidium melanogenum
AREA OF INTEREST Industrial Biotech

Abstract: Through metabolic reprogramming and the use of the RamanEye system (a high-throughput flow-mode Raman-activated cell sorter), researchers successfully achieved efficient and stable production of fungal siderophores by overcoming iron repression. This provides a novel technological pathway for the large-scale industrial production of siderophores. Moreover, the study demonstrates that the Raman-based “metabolic quality inspection and enhancement of seed cultures” can significantly improve the yield and efficiency of industrial fermentation.

SPECIES

Fungi

FlowRACS, Chips, Kits DOI : 10.1021/acssynbio.4c00897 PubMed : 40266998

2025.03.13 Huahui Chen, et al.,   mLife   

Engineering archaeal membrane-spanning lipid GDGT biosynthesis in bacteria: Implications for early life membrane transformations
AREA OF INTEREST Environment and Agriculture

Abstract: By reconstructing the archaeal membrane lipid biosynthesis pathway in Escherichia coli, researchers successfully synthesized archaeal membrane lipids ranging from simple to complex forms and investigated their effects on bacterial cell physiology. This study, combining experimental investigation with theoretical analysis, offers new perspectives on membrane lipid transitions in early life evolution and provides novel insights into possible pathways for the origin of eukaryotes.

SPECIES

Bacteria

EasySort, Chips, Kits DOI : 10.1002/mlf2.70001 PubMed : 40313982

2025.01.02 Xiaoyan Jing, Yanhai Gong, Zhidian Diao, Yan Ma, et al.,   Innovation   

Phylogeny-metabolism dual-directed single-cell genomics for dissecting and mining ecosystem function by FISH-scRACS-Seq
AREA OF INTEREST Environment and Agriculture

Abstract: The new technology, FISH-scRACS-seq (Fluorescence-In-Situ-Hybridization-guided Single-Cell Raman-activated Sorting and Sequencing), leverages the Raman-activated Optical Tweezers-based Cell Sorter developed by Single-Cell Biotech Inc. to combine species-targeting fluorescence in situ hybridization (FISH) with Raman spectroscopy, enabling the direct identification and isolation of functional single cells and their encoding enzymes from environmental samples. This dual-targeting approach enables researchers to match microbial species to their specific metabolic functions and uncover the underlying genomic resources that drive these processes. The method allows for the high-resolution study of ecological processes, linking species, metabolic abilities, genome sequences, metabolic pathways, and enzyme activities.

SPECIES

Bacteria

Microbiome

RACS-Seq DOI : 10.1016/j.xinn.2024.100759 PubMed :

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